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논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 발행연도
- 2021.1
- 수록면
- 45 - 54 (10page)
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초록· 키워드
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Brassica oleracea contains various morphotypes within the species, but genomic signatures differentiating eachmorphotype have been poorly understood of. Here, we utilized whole genome sequence data of 44 B. oleracea collections includingthose of seven different morphotypes such as cabbage, broccoli, cauliflower, kailan, kale, brussels sprout, and kohlrabi to elucidate thegenomic signature of B. oleracea morphotypes. Molecular structure analysis divided the 44 B. oleracea lines into two groups: group Irepresents broccoli, cauliflower, kailan; group II represents other B. oleracea subspecies. Kohlrabi has admixed genomic structurethrough genetic admixture analysis. Based on the population stratification result, we have investigated genetic signatures that offer thepossible evolutionary processes for the kohlrabi morphotype. Several statistical analyses were implemented to identify selectiveregions and explore 45 candidate loci that may contribute to stem swollen in kohlrabi. Above all, we identified two kohlrabi-uniquegenes, LOC106333915 and LOC106308097, showing kohlrabi-unique non-synonymous mutations, which might be candidate genesfor stem swollen in kohlrabi.
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참고문헌 (46)
참고문헌 신청
Abelenda JA / 2011 / From the model to the crop: genes controlling tuber formation in potato / Curr. Opin. Biotechnol 22:287~292
Alexander DH / 2009 / Fast modelbased estimation of ancestry in unrelated individuals / Genome Res 19:1655~1664
Bernal J / 2019 / The major storage protein in potato tuber is mobilized by a mechanism dependent on its phosphorylation status / Int. J. Mol. Sci 20:1889
Bindea G / 2009 / ClueGO : a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks / Bioinformatics 25:1091~1093
Björkman T / 1998 / High temperature arrest of inflorescence development in broccoli (Brassica oleracea var. italica L.) / J. Exp. Bot 49:101~106
Alexander DH / 2009 / Fast modelbased estimation of ancestry in unrelated individuals / Genome Res 19:1655~1664
Bernal J / 2019 / The major storage protein in potato tuber is mobilized by a mechanism dependent on its phosphorylation status / Int. J. Mol. Sci 20:1889
Bindea G / 2009 / ClueGO : a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks / Bioinformatics 25:1091~1093
Björkman T / 1998 / High temperature arrest of inflorescence development in broccoli (Brassica oleracea var. italica L.) / J. Exp. Bot 49:101~106
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