메뉴 건너뛰기
Library Notice
Institutional Access
If you certify, you can access the articles for free.
Check out your institutions.
ex)Hankuk University, Nuri Motors
Log in Register Help KOR
Subject
Humanities
General Humanities History Philosophy Religious Studies Linguistics and Literature Other Humanities
Social science
General Social Science Business Management Tourism Education Military Science Library and Information Science Law Sociology Journalism and Media Studies Psychological Science Political Science and Diplomacy Geography Public Administration Economics International Trade Anthropology Other Social Science
Natural science
General Natural Science Physics Biology Life Sciences Mathematics/Statistics Astronomy Earth Science Chemistry Other Natural Science
Engineering
General Engineering Architectural Engineering Mechanical Engineering Industrial Engineering Material/Energy Engineering Electrical and Electronic Engineering Marine and Ocean Engineering Chemical Engineering Computer Science Other Engineering
Medical science
General Medical Science Nursing Science Veterinary Pharmacy Traditional Korean Medicine Basic Medicine Clinical Medicine Other Medicine
Agriculture and Fishery
General Agriculture and Fishery Agriculture Fishery Science Food Science Forestry Animal Husbandry Marine Transportation Studies Other Agriculture and Fishery
Art and Kinesiology
General Arts Design Fine Arts Cosmetology Photography Music Fashion Kinesiology Performing Media Arts Other Arts and Kinesiology
Interdisciplinary Studies
Interdisciplinary Research Science and Technology Studies Brain and Cognitive Science Technology Policy Other Interdisciplinary Studies

KOR

Identification of a novel plant RNA virus species of the genus Amalgavirus in the family Amalgaviridae from chia (Salvia hispanica)
Recommendations
Search

논문 기본 정보

Type
Academic journal
Author
JiSeok Lee (중앙대학교) Goh Chul-Jun (중앙대학교) Dongbin Park (중앙대학교) Yoonsoo Hahn (중앙대학교)
Journal
한국유전학회 Genes & Genomics Genes & Genomics Vol.41 No.5 KCI Accredited Journals
Published
2019.1
Pages
507 - 514 (8page)

Usage

cover
Identification of a novel plant RNA virus species of the genus Amalgavirus in the family Amalgaviridae from chia (Salvia hispanica)
Ask AI
Recommendations
Search

Research history (2)

2020

치아의 종자에서 유래한 전사체 데이터 분석을 통한 신규 식물 아말가바이러스 종의 유전체 서열 발굴
이지석 생명과학과 2020.01 Thesis

2019

Identification of a novel plant RNA virus species of the genus Amalgavirus in the family Amalgaviridae from chia (Salvia hispanica)
JiSeok Lee ,  Goh Chul-Jun ,  Dongbin Pa and others 2 Genes & Genomics 2019.01 Academic journal
  • Are you curious about the follow-up research of this article?
  • You can check more advanced research results through related academic papers or academic presentations.
  • Check the research history of this article

Abstract· Keywords

Report Errors
Background Chia (Salvia hispanica) is a flowering plant in the family Lamiaceae, which produces seeds that are a rich source of various nutritional compounds. Objective To identify a novel RNA virus potentially associated with chia. Methods Transcriptome data obtained from developing chia seeds were assembled into contigs. Sequence contigs containing an open reading frame (ORF) that showed amino acid identities with a viral RNA-dependent RNA polymerase (RdRp) were identified and analyzed. Results A genomic sequence of a novel plant RNA virus named Salvia hispanica RNA virus 1 (ShRV1) was identified in a chia seed transcriptome dataset. The ShRV1 genome sequence has two ORFs that showed high sequence identities with ORFs of known members of the genus Amalgavirus in the family Amalgaviridae. Amalgaviridae is a family of positivesense double-stranded non-segmented RNA viruses that infect plants, fungi, and animals. The ShRV1 genome encodes two proteins: a putative replication factory matrix-like protein from ORF1 and an RdRp from the fused ORF of ORF1 and ORF2 by a + 1 programmed ribosomal frameshifting (PRF) mechanism. A conserved + 1 PRF motif sequence UUU_CGU was found at the ORF1/ORF2 boundary. A comparison of 31 amalgavirus ORF1 + 2 fusion proteins revealed that only three positions were repeatedly used as a + 1 PRF site during amalgavirus evolution. Conclusion ShRV1 is a novel virus found to be associated with chia and may be useful for studying the molecular features of amalgaviruses.
#Salvia hispanica RNA virus 1 · Amalgavirus · + 1 Programmed ribosomal frameshifting · Chia · Salvia hispanica

Contents

No content found

References (35)

Add References
Bankevich A / 2012 / SPAdes : a new genome assembly algorithm and its applications to single-cell sequencing / J Comput Biol 19:455~477 google schola Crooks GE / 2004 / WebLogo : a sequence logo generator / Genome Res 14:1188~1190 google schola Debat HJ / 2017 / Molecular identification and characterization of two Rubber dandelion amalgaviruses / bioRxiv:229443 google schola Depierreux D / 2016 / Nucleotide sequence of Zygosaccharomyces bailii virus Z: evidence for + 1 programmed ribosomal frameshifting and for assignment to family Amalgaviridae / Virus Res 217:115~124 google schola Edgar RC / 2004 / MUSCLE: multiple sequence alignment with high accuracy and high throughput / Nucleic Acids Res 32:1792~1797 google schola

Recommendations

It is an article recommended by DBpia according to the article similarity. Check out the related articles!

Related Authors

Recently viewed articles

Comparison and Analysis of Methodology for e-Plant Portal System Development
Ahn Jang Won, Jee Sang BokKOREAN SOCIETY OF CIVIL ENGINEERS2006.10
 Effects of Personal Values of Adolescents on Preference for and Attitude toward Educational Tourism : Focused on High School students in Busan, South Korea
Kim, Jong-hoon, Jang 외 1명Korean Hospitality and Tourism Academe2016.10

Comments(0)

0

Write first comments.